{"id":211,"date":"2017-10-07T11:35:20","date_gmt":"2017-10-07T18:35:20","guid":{"rendered":"https:\/\/www.cardiolab.nau.edu\/?page_id=211"},"modified":"2021-08-18T12:08:35","modified_gmt":"2021-08-18T19:08:35","slug":"resources","status":"publish","type":"page","link":"https:\/\/www.cardiolab.nau.edu\/index.php\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"<h3>Our lab&#8217;s Github page:<\/h3>\n<p><a href=\"https:\/\/github.com\/amir-cardiolab\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/github.com\/amir-cardiolab<\/a><\/p>\n<h2>Open-source\/free software:<\/h2>\n<ul>\n<li><a href=\"http:\/\/simvascular.github.io\/\"><strong>SimVascular:<\/strong><\/a> A comprehensive software from medical image data to patient-specific blood flow simulation.<\/li>\n<li><a href=\"http:\/\/www.vmtk.org\/\"><strong>Vascular Modeling Toolkit (VMTK):<\/strong><\/a> A collection of Python libraries for image-based modeling of blood vessels.<\/li>\n<li><a href=\"https:\/\/fenicsproject.org\/\"><strong>FEniCS:<\/strong><\/a> A flexible finite element method (FEM) platform for solving arbitrary PDEs using a Python interface.<\/li>\n<li><a href=\"https:\/\/www.vtk.org\/\"><strong>The Visualization Toolkit (VTK):<\/strong><\/a> A collection of C++ libraries for visualization and post-processing of a wide range of data. VTK libraries are available in Python, providing powerful and efficient post-processing of different types of computational data.<\/li>\n<li><a href=\"https:\/\/www.paraview.org\/\"><strong>ParaView:<\/strong><\/a> A powerful VTK based visualization\/post-processing software.<\/li>\n<li><a href=\"https:\/\/www.kitware.com\/volview\/\"><strong>VolView:<\/strong><\/a> Medical image data visualization.<\/li>\n<li><a href=\"https:\/\/www.openflipper.org\/\"><strong>OpenFlipper:<\/strong><\/a> Processing mesh data.<\/li>\n<li><a href=\"http:\/\/www.meshmixer.com\/\"><strong>Meshmixer:<\/strong><\/a> Processing triangle surface mesh data.<\/li>\n<li><a href=\"https:\/\/www.freecadweb.org\/\"><strong>FreeCAD:<\/strong><\/a> Scriptable 3D CAD modeler.<\/li>\n<li><a href=\"http:\/\/shaddenlab.berkeley.edu\/software.html\"><strong>FlowVC:<\/strong><\/a>\u00a0 Lagrangian processing of velocity data. FTLE, particle residence time, particle tracking, ..<\/li>\n<\/ul>\n<h2>Useful online lectures:<\/h2>\n<ul>\n<li><a href=\"https:\/\/ocw.mit.edu\/courses\/mathematics\/18-06-linear-algebra-spring-2010\/video-lectures\/\">Linear Algebra (MIT, Dr. Gilbert Strang).<\/a><\/li>\n<li><a href=\"https:\/\/ocw.mit.edu\/courses\/mathematics\/18-085-computational-science-and-engineering-i-fall-2008\/video-lectures\/\">Computational Science and Engineering 1 (MIT, Dr. Gilbert Strang).<\/a><\/li>\n<li><a href=\"https:\/\/ocw.mit.edu\/courses\/mathematics\/18-086-mathematical-methods-for-engineers-ii-spring-2006\/video-lectures\/\">Computational Science and Engineering 2 (MIT, Dr. Gilbert Strang).<\/a><\/li>\n<li><a href=\"https:\/\/www.youtube.com\/watch?v=ycJEoqmQvwg&amp;list=PLbN57C5Zdl6j_qJA-pARJnKsmROzPnO9V\">Nonlinear Dynamics and Chaos (Cornell, Dr. Steven Strogatz).\u00a0<\/a><\/li>\n<li><a href=\"http:\/\/www.math.colostate.edu\/~bangerth\/videos.html\">Finite Element Methods in Scientific Computing (Texas A&amp;M, Dr.\u00a0Wolfgang Bangerth).<\/a><\/li>\n<li><a href=\"https:\/\/ocw.mit.edu\/resources\/res-2-002-finite-element-procedures-for-solids-and-structures-spring-2010\/nonlinear\/\">Nonlinear Finite Element for Solids and Structures (MIT, Dr.\u00a0Klaus-J\u00fcrgen Bathe).<\/a><\/li>\n<li><a href=\"https:\/\/ocw.mit.edu\/courses\/electrical-engineering-and-computer-science\/6-0001-introduction-to-computer-science-and-programming-in-python-fall-2016\/lecture-videos\/\">Introduction to Computer Science and Programming in Python (MIT).<\/a><\/li>\n<li><a href=\"https:\/\/www.youtube.com\/playlist?list=PL3332087079A9832B\">Computational Fluid Dynamics (Boston University, Dr.\u00a0Lorena Barba).<\/a><\/li>\n<li><a href=\"https:\/\/www.youtube.com\/playlist?list=PL0EC6527BE871ABA3\">Classical Fluid Mechanics Lecture Series.<\/a><\/li>\n<li><a href=\"https:\/\/www.youtube.com\/channel\/UCm5mt-A4w61lknZ9lCsZtBw\/playlists\">Data Driven Modeling and Dynamical Systems (University of Washington, Steve Brunton)<\/a><\/li>\n<li><a href=\"https:\/\/www.youtube.com\/channel\/UCoUOaSVYkTV6W4uLvxvgiFA\/videos\">Data Driven Modeling and Scientific Computation (University of Washington, Nathan Kutz)<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Our lab&#8217;s Github page: https:\/\/github.com\/amir-cardiolab Open-source\/free software: SimVascular: A comprehensive software from medical image data to patient-specific blood flow simulation. Vascular Modeling Toolkit (VMTK): A collection of Python libraries for image-based modeling of blood vessels. FEniCS: A flexible finite element<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/pages\/211"}],"collection":[{"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/comments?post=211"}],"version-history":[{"count":9,"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/pages\/211\/revisions"}],"predecessor-version":[{"id":582,"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/pages\/211\/revisions\/582"}],"wp:attachment":[{"href":"https:\/\/www.cardiolab.nau.edu\/index.php\/wp-json\/wp\/v2\/media?parent=211"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}